Enzymes are complex proteins that catalyze chemical reactions. Enzymes act on substrates that can either be cleaved or joined to form a new product (e.g., carbonic anhydrase enzyme → CO2 + H20 ⇄ H2CO3). They are essential for life, if enzymes did not exist, cellular reactions would not occur fast enough to sustain life. Thus, enzyme deficiencies can result in severe diseases (e.g., ).
The name of enzymes is usually based on the reaction catalyzed plus the suffix -ase. For example, the name of the enzyme that adds hydroxyl groups (OH-) formed as follows: hydroxyl + -ase → hydroxylase.
- Active site: binding site for a specific substrate on a specific enzyme
- Specificity: Enzymes are highly specific for their substrate and product.
- Rate: enzymes catalyze reactions by a factor of 106–1011
Coenyzmes: many enzymes require coenzymes (e.g., biotin) that allow them to perform their action on a substrate.
- Usually small organic molecules derived from metal ions or vitamins
- Enzymes do not affect the energy level of substrates or products (free energy released remains the same).
- Enzymes are able to decrease the energy of activation required to start a reaction.
- The velocity of enzymatic reactions increases with temperature (up to 37o C in humans).
- Temperatures > 37o C slow down enzymatic reactions and can result in denaturation of enzymes.
- pH: Each enzyme has a specific pH at which it can achieve maximum velocity (Vmax).
Energy (∆G) for enzymatic reactions usually comes from the break down of ATP or GTP bonds (hydrolysis). Enzymatic reactions can occur spontaneously or nonspontaneously. The following are relationships between energy and enzymatic activity.
|Oxidoreductases|| || |
|Hydrolases|| || |
|Lyases|| || |
|Isomerases|| || || |
|Base molecule||Transferred group||Carrier of energy||Released energy||Metabolic site|
|ADP||Phosphate||-31 KJ/mol|| |
|Thiamine pyrophosphate||B1||Oxidative decarboxylation|
|Coenzyme A||B5||Acyl group transfer|
|Pyridoxal phosphate||B6||Transamination, dehydration|
|Biotin||B7||Carboxyl group transfer|
|Tetrahydrofolate||B9||Methyl group transfer|
|Cobalamin||B12||Alkyl group transfer|
|S-Adenosylmethionine (SAM)||Methyl group transfer|
|Ascorbic acid||Vitamin C|| |
Electron transfer and hydroxylation
|Phylloquinone||Vitamin K||Electron and carboxyl group transfer|
Electron and oxygen atom transfer
|ATP||Phosphate group transfer|
For more information, see.
|Glycolysis|| || |
|Gluconeogenesis|| || |
| || |
|Glycogenesis|| || |
| || |
|Pyrimidine synthesis|| || || |
|Purine synthesis|| || || |
|Urea cycle|| || |
|Fatty acid synthesis|| |
| || |
|Cholesterol synthesis|| || |
[E] = enzyme, [S] = substrate, [P] = product, [V] = velocity
- E + S ⇄ ES → E + P
- Maximum velocity (Vmax): maximum: maximum rate at which an enzyme can catalyze a reaction
- Michaelis constant: (Km): the substrate concentration at which half of the active sites of the enzymes are bound to the substrate
- Michaelis-Menten equation: v = V [S] / Km [S]
Lineweaver-Burk equation and plot
The Lineweaver-Burk equation is a double reciprocal of the Michaelis-Menten equation; , where V = Vmax [S] / Km [S] (if [E] remains constant), becomes 1 / v = Km / Vmax× 1/[S] + 1 / Vmax. It represents enzyme kinetics in a linear graph rather than a hyperbola. This equation is particularly important to determine the effect of drugs on enzymes.
- Intercept with y axis: 1/Vmax: the further from zero, the lower Vmax
- Intercept with x axis: 1/-Km : the closer to zero, the lower the affinity
- Slope: Km/Vmax
The details of pharmacodynamics are explained in the learning card on the .
Competitive inhibitors (reversible)
Competitive inhibitors (irreversible)
|Similar to the substrate|| || || |
|Effect of increased [S]|| || || |
|Binding site|| |
|Effect on Km|| || || |
|Effect on Vmax|| || || |
|Pharmacodynamic effect|| || || |
For more information on the effects of inhibitors andsee .