Summary
COVID-19 is an acute infectious respiratory disease caused by infection with the coronavirus subtype SARS-CoV-2, first detected in Wuhan, China, in December 2019. It is currently spreading worldwide and is considered a pandemic disease. Transmission occurs primarily via respiratory droplets (sneezing and coughing). Following an incubation period of 2–14 days (average ∼ 5 days), COVID-19 usually presents with fever and upper respiratory symptoms, especially dry cough and often dyspnea; asymptomatic courses and certain other symptoms can also occur. Clinical courses range from very mild to developing into severe with pneumonia and even critical with life-threatening complications such as ARDS, shock, and organ dysfunction. Recommendations for infection control and preventive measures vary according to the appropriate health department/agency, but generally involve personal hygiene (e.g., washing hands), avoiding exposure/public places, quarantines/isolation, and wearing suitable personal protective equipment (PPE). Diagnosis is confirmed by RT-qPCR of SARS-CoV-2 RNA isolated from patient specimens, preferably from at least a nasopharyngeal swab. In some cases of mild symptoms and depending on local recommendations, diagnostic testing may not be warranted. In mild clinical courses, patients should self-isolate with supportive care and monitoring at home. Patients with clinical manifestations of severe courses (i.e., dyspnea, cyanosis, chest discomfort, or mental status change), signs of respiratory distress (SpO2 ≤ 93%, respiratory rate > 22/min), or possibly at high-risk for severe course (≥ 65 years or certain underlying conditions) should be admitted. Hospitalized patients should receive supportive and oxygen therapy while being regularly monitored with supporting laboratory and imaging studies (Chest x-ray, Chest CT, possibly POCUS). Notable findings indicative of progression to pneumonia include lymphocytopenia, elevated CRP, and CT scans showing ground-glass opacities (can progress to solid white consolidation in severe infection) and inter- and/or intralobular septal thickening (indicating swelling of the interstitial space). POCUS can assist in monitoring of pneumonia and possibly screening for cardiomyopathy. Intensive care and airway management are indicated for patients displaying signs of respiratory failure (e.g., dyspnea with hypoxemia, respiratory rate > 30/min). Endotracheal intubation should be initiated early, preferably by rapid-sequence induction and avoid virus aerosol-generating procedures (AGPs), such as noninvasive ventilation, high-flow oxygen therapy, bronchoscopy, and nebulizer treatment, whenever feasible. Mechanical ventilation should consist of lower tidal volumes and PEEP and FiO2 settings in line with ARDS protocols (e.g., ARDSnet protocol). There is currently no effective treatment; any antiviral treatments should only be considered case-by-case as part of research studies and compassionate use programs. The overall mortality rate ranges from ∼ 0.5–3%, and greatly increases for elderly (∼ 15% for > 80 years) as well as those with certain underlying conditions (e.g., cardiac, pulmonary, diabetes mellitus).
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References:[1][2]
Epidemiology
-
Incidence and prevalence
- The disease is currently spreading worldwide. Refer to the Johns Hopkins University & Medicine Coronavirus Resource Center (https://coronavirus.jhu.edu/map.html) for up-to-date statistics. [3]
- To date, the greatest numbers of confirmed cases have been reported from the US, India, Brazil, United Kingdom, Russia, and France. The greatest numbers of deaths have been reported from the US, Brazil, Mexico, India, United Kingdom, and Italy.
-
Outbreak status
- WHO declared the COVID-19 outbreak a Public Health Emergency of International Concern on January 30, 2020.
- WHO classified the disease as a pandemic on March 11, 2020.
-
Infectivity
- Basic reproduction number (R0): ∼ 2–4 [4][5][6]
-
“Flattening the curve”
- Efforts to prevent the spread of infection (e.g., social distancing, quarantine) decrease the R0, i.e., “flatten the curve” of the number of new cases.
- Although the total number of cases may not decrease, such actions distribute the number of new cases over a longer period of time, which allows health care facilities (HCFs) to better cope and not become overwhelmed.
- It also provides more time to determine if there are effective antiviral treatments and to develop a potential vaccine.
- ∼ 31–43% attack rate of family members in China [7]
-
Demographics
- Men and women are equally affected. [8]
- Affects people of all ages
- In the US, the median age has declined from 40.8 years in March–April, to 35.8 years in June–July. [9]
-
Fatality rate: ranges from ∼ 0.5 to 3%.
- Greatly increases > 60 years of age, and for individuals > 80 years reaching ∼ 15% [8]
Pathophysiology
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
- Like other coronaviruses, SARS-CoV-2 is an enveloped, nonsegmented, positive-sense, ssRNA virus.
- The viral genome is packaged into a helical ribonucleocapsid; by the N protein: plays an essential role during viral self-assembly.
-
Genome encodes:
- Four structural proteins:
- Spike (S): allows entry by attaching to the ACE2 receptor of the host cell
- Envelope (E)
- Membrane (M)
- Nucleocapsid (N)
- 16 nonstructural proteins: form the replicase–transcriptase complex
- Four structural proteins:
- Specifically, it is a β-coronavirus. The other two β-coronaviruses were SARS-CoV and MERS-CoV, which both also caused outbreaks of potentially fatal respiratory tract infections in 2003 and 2012, respectively. [10]
- SARS-CoV-2 shares 79.5% identity to the SARS-CoV genome. [11]
-
Genome sequencing shows 96.2% identity to a bat coronavirus RaTG13, making bats the most likely natural host of the SARS-CoV-2 origin. [11]
- The initial animal-to-human transmission (host jump) likely occurred via direct exposure to an unknown intermediate host at the Huanan Seafood Wholesale Market in Wuhan, China, a live animal and seafood market (“wet market”) that was identified as the point of origin. [12]
- One study proposes that SARS-CoV-2 is a recombinant virus between a bat coronavirus and an unknown coronavirus strain. Homologous recombination may have contributed to the ability of the virus to infect different species (i.e., humans and certain animals). [13]
SARS-CoV-2 variants
- Thousands of variants already detected worldwide
- Potential risks of emerging SARS-CoV-2 variants:
- As of February 2021, the most concerning variants are:
-
B.1.1.7 (501Y.V1, United Kingdom):
- Has been associated with increased transmissibility when compared with the wild-type (original) strain of the virus. [14][15][16]
- Although some studies have shown an association with increased disease severity and increased risk of death, further research is needed. [15][17]
-
B.1.351 (501Y.V2, South Africa):
- Might be associated with increased transmissibility due to higher viral loads but further investigation is needed. [18]
- There is currently no evidence that this variant is associated with increased disease severity. [17]
- Preliminary reports suggest that one of the spike protein mutations present in this variant (E484K) might be associated with an escape from neutralizing antibodies, potentially impacting immunity from vaccination or prior infection [19][20][21]
-
B.1.1.28 P.1 (501Y.V3, Brazil):
- Also contains the spike protein mutation E484K and, therefore, the potential of impacting immunity seems to be similar to B.1.351 variant.
-
B.1.1.7 (501Y.V1, United Kingdom):
Viral life cycle
-
Invasion of host cells [22]
-
Entry point: Angiotensin-converting enzyme 2 (ACE2) via the spike protein [23][24][25][26][27][28]
- Catalyzes the conversion of angiotensin II and is expressed in the surface epithelium of the lungs, heart and other organs
- Has been identified as a functional receptor (i.e., a cellular binding site) for SARS-CoV-2 in animals and humans
- Increased concentrations of ACE2 could play a role in the pathogenesis of COVID-19: [29][30]
- Associated with certain chronic conditions (e.g., diabetes mellitus, cardiovascular disease, chronic obstructive pulmonary disease, cigarette smoking)
- Might explain the higher risk of severe courses of COVID-19 in patients with certain underlying health conditions
- Transmembrane protease, serine 2 (TMPRSS2): The virus uses TMPRSS2 to invade host cells. It then fuses with the membrane and enters the cell via endosomes.
-
Entry point: Angiotensin-converting enzyme 2 (ACE2) via the spike protein [23][24][25][26][27][28]
-
Replication cycle
- Enzymes, such as RNA polymerase or proteases, that are virally induced by endosomal viral RNA release replicate viral components.
- Endosomes with newly constituted viruses are released via exocytosis.
Effects
-
Direct cytopathic effects
- Virus-induced damage, particularly to the alveolar epithelium
- Other organs, especially the liver and heart, can also be affected.
-
Dysregulated immune response [31][32]
- Activation of the immune system, which involves the release of cytokines (e.g., tumor necrosis factor, IL-1β, IL-6), can cause an acute inflammatory response.
- An overshooting immune response through very high levels of cytokines (“cytokine storm”) can lead to organ failure and death.
- While some of these mechanisms are similar to those that occur in sepsis, COVID-19 usually does not lead to hypotension, which is a defining feature of septic shock.
There are currently many hypotheses founded on the research conducted on previous coronavirus outbreaks (MERS, SARS); the viability of these hypotheses and the application of past research to the present situation has yet to be determined!
Initial infection
-
Transmission: mainly person-to-person [33][34]
- Primarily via respiratory droplets: can be emitted during sneezing and coughing as well as loud speech [35]
- Via aerosols: infectious concentrations of viral particles were detected in aerosols for a duration of 3 hours and could last even longer
- Direct contact transmission: especially hand-to-face contact
-
Fomite (surface) transmission: viral particles remain infectious on surfaces outside a host for up to a few days depending on the material [36]
- Latex, aluminum, copper: ∼ 8 hours
- Cardboard: ∼ 24 hours
- Countertops, plastic, stainless steel: ∼ 1–3 days
- Wood, glass: ∼ 5 days
- Fecal-oral transmission: unlikely as it has not yet been documented to date [37][38][39]
- Vertical transmission: see “COVID-19: pregnancy and breastfeeding”
- Incubation period: 2–14 days, usually ∼ 5 days [40][41][42]
-
Duration of infectiousness
- It is estimated that infected individuals:
- Become infectious 2.5 days before the onset of symptoms
- Cease to be infectious 8 days after the onset of symptoms.
- The period of greatest infectiousness is at the beginning of symptoms. [43][44][45]
- Viral RNA has been found in respiratory samples long after initial infection, [46] but the presence of detectable viral RNA does not mean that the individual is still infectious.
- It is estimated that infected individuals:
-
Immunity and reinfection:
- There is evidence of immune responses to SARS-CoV-2 following initial infection [45][47][48] or exposure to viral components [49].
- But the duration of immunity and its efficacy on the prevention of reinfection is still uncertain. [50][51] [52][53][54]
- Some studies suggest that the magnitude of the immune response might be dependent on the severity of the disease. [55][56]
- Cases of reinfection are possible but rare [57][58][59][60]
The transmission of SARS-CoV-2 by asymptomatic individuals can occur, but individuals are most contagious when they are symptomatic. [61]
Clinical features
-
Symptoms
-
Often asymptomatic
- Assumed to be more likely in children [62]
- Symptomatic cases [63][64][65]
- Most common
-
Common
- Shortness of breath: an early indicator of rapid deterioration developing
- Loss of smell; (sometimes the only symptom!) and/or taste [66][67][68]
- Loss of appetite
- Myalgia
- Less common
- Diarrhea and abdominal pain: sometimes a presenting symptom and, rarely, the only one [69]
- Sputum production, rhinitis, sore throat, headache, conjunctivitis
- Coagulopathy: Thromboembolic events (e.g., pulmonary embolisms) might be the cause of death in many fatal COVID-19 cases. [70] [71]
- Multisystem inflammatory syndrome in children (MIS-C), which manifests with similar features to Kawasaki disease or toxic shock syndrome, has been described in children in the context of active and previous infections with SARS-CoV-2. (For more details, see “COVID-19: children” section below.) [72] [73]
- The trio of fever, cough, and dyspnea is only present in ∼ 15%.
-
Often asymptomatic
-
Course: The disease has a wide spectrum of severity, ranging from mild to critical. It typically starts with mild symptoms that can progress to more severe courses after about 5–7 days. [12][62][65][74][75]
- Mild (∼ 80%)
- Uncomplicated course without dyspnea
- Lasts 1–2 weeks
- Severe (∼ 15%)
- Critical disease (∼ 5%) [76]
- Signs of severe pneumonia (respiratory failure), acute respiratory distress syndrome (ARDS), coagulopathy, shock, and possibly multiple organ dysfunction syndrome (MODS)
- Lasts 3–6 weeks
- Mild (∼ 80%)
Differential diagnoses
COVID-19 | Influenza | Common cold | Allergic rhinitis | |
---|---|---|---|---|
Fever | +++ | +++ | - | - |
Cough | +++ | +++ | +++ | ++ |
Fatigue | +++ | +++ | + | - |
Shortness of breath | ++ | + | - | - |
Loss of appetite | ++ | ++ | - | - |
Myalgia | ++ | +++ | + | - |
Loss of smell/taste | ++ | - | ++ | ++ |
Runny nose | + | + | +++ | +++ |
Sneezing | - | - | +++ | +++ |
Sore throat | + | + | +++ | - |
Diarrhea | + | + | - | - |
Headache | + | +++ | ++ | - |
Itchy eyes | - | - | - | +++ |
+++ = very common, ++ = common, + = less common, - = rare |
Compared to influenza, a higher proportion of patients with COVID-19 require mechanical ventilation and longer ventilation periods. [77] Patients with COVID-19 also have a higher proportion of extrapulmonary complications![78]
Infection control and preventive measures
General protective measures
-
Hand hygiene
- Hands should be washed with soap and water or disinfected with a virucidal hand disinfectant after contact with potentially virus-contaminated objects and infected persons
- Avoid touching the face: i.e., the eyes, nose, and mouth.
- Respiratory hygiene and cough etiquette
-
Avoid exposure
- Avoid crowds of people (public transport, train stations, airports, mass events).
- Avoid travel to areas of outbreak.
- Follow local health agency recommendations regarding attendance of events and gatherings.
Masks
-
General considerations
- Respirators and masks should be used resourcefully with special consideration for healthcare facility (HCF) needs.
- Sufficient supplies are currently at risk due to the high global demand for personal protective equipment (PPE). [79]
- If not handled correctly (e.g., by bringing infectious material near the airways when touching the mask to adjust it), face coverings and masks might pose an additional risk of infection to the user.
-
Cloth face coverings [80]
- Indication: everyone in public settings
- Explicitly recommended in some regions (e.g., the US) for public settings in which physical distancing of 2 meters (∼ 6 feet) cannot be maintained sufficiently (e.g., grocery stores, pharmacies)
- Might prevent transmission from asymptomatic infected individuals who are unaware of their infectious status [81]
- Might help reduce the diffusion of viral particles and the range of contamination when exhaling, speaking, coughing, or sneezing
- May not reliably prevent the dissemination of viral particles to the outside of the mask when an infected individual is coughing [82]
- The CDC offers free “Sew and No Sew Instructions” for self-made cloth face coverings on their website: [83]
-
Surgical masks
- Indication: individuals with confirmed or suspected infection
- Might be efficient in preventing the transmission of viral particles from symptomatic patients by filtering the exhaled breath [84]
- Might reduce the diffusion of respiratory secretions (via droplets and aerosols) and the range of contamination, e.g., during patient transports
- May not reliably prevent the dissemination of viral particles to the outside of the mask when an infected individual is coughing [82]
- Do not provide adequate protection for the user especially during high-risk exposures (e.g., invasive diagnostics, close contact)
-
N95 respirators
- Indication: health workers and persons taking care of an infected individual in close settings, such as healthcare facilities (HCFs) or home care settings
- N95 respirators and protective eyewear are recommended for health care personnel that are potentially exposed to airborne and fluid hazards (e.g., during invasive procedures). [85]
- If N95 respirator bottlenecks occur, unvalved N95 respirators may be used with a face shield.
The CDC recommends the use of cloth face coverings for everyone in public settings (e.g., grocery stores) to reduce the spread of SARS-CoV-2 by asymptomatic infected individuals. Surgical masks and N95 respirators should be reserved for health care workers as a response to the current global shortage of personal protective equipment (PPE). [79][80]
Exposure risk management
Depending on official risk assessments, public health measures intended to prevent the spread of COVID-19 include social distancing, home isolation, quarantine, and lockdown of entire communities or countries. The information here is primarily based on CDC recommendations.
-
Public health measures [86]
-
Social distancing means individuals should maintain a distance of ∼ 6 feet (2 meters) from others and avoid:
- Mass gatherings
- Congregate settings: crowded public places where close contact may occur (e.g., movie theaters, shopping centers)
- Quarantine: separation of a person or group of people who were exposed to the virus but are not yet symptomatic
- Isolation: separation of a person or group of people who are infected or reasonably believed to be infected with SARS-CoV-2
-
Social distancing means individuals should maintain a distance of ∼ 6 feet (2 meters) from others and avoid:
-
Exposure risk assessment and management recommendations (adapted from the CDC) [87][88]
- All U.S. residents are currently at risk of being exposed to SARS-CoV-2 and, therefore, are advised to:
- Practice public health measures (especially social distancing), wash hands and disinfect surfaces frequently, and use cloth face covers when in public [89]
- Monitor themselves for symptoms of COVID-19 (especially fever, cough, shortness of breath)
- Take their temperature if symptoms occur
- Call a health care provider in case of an emergency (e.g., trouble breathing) or before seeking general medical care at a health care facility
- Specific recommendations apply to people with high-risk exposures, such as:
- Everyone with prolonged close contact (< 6 feet apart and without PPE) with an infectious individual , e.g., a household member, an intimate partner, or a person in need of care
- Travelers returning from another country or a cruise ship [90]
- Individuals with a recent high-risk exposure are advised to:
- Isolate at home for 14 days and practice social distancing in regard to other household members
- Avoid any contact with individuals with risk factors for severe courses of COVID-19
- Monitor themselves for symptoms of COVID-19 (especially fever, cough, shortness of breath)
- Check their body temperature to monitor for fever twice daily
- Contact a health care provider to get advice on their specific situation
- All U.S. residents are currently at risk of being exposed to SARS-CoV-2 and, therefore, are advised to:
Infection prevention and control in healthcare settings
Recommendations vary according to the appropriate health department/agency. Some recommendations from the CDC include: [91]
-
Limit how germs enter HCF
- Use telemedicine when possible
- Manage visitor access and movement
- Cancel elective procedures
- Screen patients for respiratory symptoms
- Encourage respiratory hygiene
-
Isolate symptomatic patients with suspected or confirmed COVID-19
- Set up suitable triage areas
- Place in private rooms with bathroom (if possible) with closed doors
- Prioritize airborne infection isolation rooms (AIIRs) for patients requiring aerosol-generating procedures (AGPs)
-
Protect health care personnel
- Emphasize hand hygiene
- Limit contact with patients with suspected or confirmed COVID-19: respect barriers, limit staff providing care
- Prioritize respirators
- Avoid AGPs
- Follow recommendations for PPE for COVID-19 (see below) and optimize supply
Personal protective equipment (PPE) for COVID-19
- The following PPE items and procedures should be considered for individuals in close contact with COVID-19 cases or PUI: [91][92]
Putting on PPE
- Long-sleeved isolation gown: Fully cover torso, extending from the neck to knees and end of wrists; then close the backside.
- N95 respirator or facemask: secure and fit
- Eye protection (e.g., goggles or disposable full-face shield): place and adjust
- Clean nonsterile gloves: cover wrist of isolation gown
Safely removing PPE [92]
- There are a variety of ways to remove PPE without contamination.
- Any part of the PPE directly exposed to the patient (especially the front and sleeves) is contaminated and should not be touched with ungloved hands during removal.
- All PPE (except for a respirator if worn) should be removed before leaving the contaminated space (e.g., patient room).
- Anytime hands are contaminated, immediately wash them, or use an alcohol-based hand sanitizer between steps.
-
Example 1 (in order):
- Gloves:
- Using a gloved hand, grasp the palm area of the other gloved hand and peel it off.
- Hold removed glove in gloved hand.
- Slide fingers of ungloved hand under remaining glove at wrist (do not touch the gown!) and slide it inside out over the first glove.
- Discard gloves in a waste container.
- Goggles or face shield:
- Remove from the back by lifting the head band or ear pieces.
- If reusable: Place in designated receptacle; Otherwise, discard in a waste container.
- Gown:
- Unfasten ties without contacting body with sleeves.
- While only touching the inside, pull gown away from neck and shoulders.
- Turn it inside out over the arms.
- Roll into a bundle and discard in a waste container.
- Mask or respirator
- Grasp bottom ties or elastics, then together with the top ones, and remove upwards without touching the front.
- Discard in a waste container.
- Immediately wash hands or use an alcohol-based hand sanitizer.
- Gloves:
-
Example 2 (in order):
- Gown and gloves together:
- Grasp the gown in front and pull away from the body until the ties break (only touch outside of gown with gloved hands).
- While removing the gown over the arms, roll the gown inside-out.
- Before the gown is removed from the wrists, using a gloved hand to grasp a portion of the glove of the other hand and sleeve of the gown together.
- With the glove and sleeve secured together, pull the arm of this side back, allowing the naked hand to exit the glove while only being exposed to the inside of the gown.
- Now using the ungloved hand, slide the remaining part of the gown and glove from the other side off, only touching the inside, in an inside-out manner and into the bundle.
- Place the gown and gloves into a waste container.
- Goggles or face shield:
- Remove from the back by lifting the head band or ear pieces.
- If reusable: Place in the designated receptacle; otherwise, discard in a waste container.
- Mask or respirator
- Grasp bottom ties or elastics together with the top ones, and remove upwards without touching the front.
- Discard in a waste container.
- Immediately wash hands or use an alcohol-based hand sanitizer
- Gown and gloves together:
Evaluation and testing
Quantitative reverse transcription real-time polymerase chain reaction (RT-qPCR) of RNA collected from patient specimens is conducted to confirm infection with SARS-CoV-2. It is important to follow health department policies for collecting clinical specimens to minimize the risk of spreading infection and ensure quick and accurate test results.
Initial medical evaluation
-
Calling ahead
- Individuals with mild COVID-19 symptoms and/or exposure to the virus who think they should be medically evaluated for COVID-19 should first call their healthcare facility (HCF) before visiting to determine if there are special directions (e.g., visit a specific site for testing).
- If emergency medical services (EMS) are required (COVID-19 related or not), EMS should be notified if the individual is at risk of having COVID-19.
-
Recommendations for COVID-19 testing: vary according to health departments
- Guiding factors consider epidemiological data and availability of diagnostic testing resources and health care personnel.
- The CDC states that not everyone needs testing for COVID-19, and defers decisions about testing to respective health departments and/or individual clinicians. [93]
- Exception: Older adults or individuals with certain underlying conditions, including cardiovascular, pulmonary, renal, or metabolic (diabetes mellitus) conditions should seek medical care for testing as soon as symptoms begin.
- In general, clinicians are urged to make judgment calls if a patient's signs, symptoms, and risk factors warrant COVID-19 testing.
- In some cases (e.g., if testing is limited), predetermined priorities should be considered to maximize the benefits of testing. The CDC has set priorities for testing, consisting of: [94]
-
Priority 1: Ensure optimal care options for all hospitalized patients, lessen the risk of nosocomial infections, and maintain the integrity of the healthcare system
- Hospitalized patients
- Symptomatic healthcare workers
-
Priority 2: Ensure that those who are at highest risk of complication of infection are rapidly identified and appropriately triaged
- Patients in long-term care facilities with symptoms
- Patients 65 years of age and older with symptoms
- Patients with underlying conditions with symptoms
- First responders with symptoms
-
Priority 3: As resources allow, test individuals in the surrounding community of rapidly increasing hospital cases to decrease community spread, and ensure health of essential workers
- Critical infrastructure workers with symptoms
- Individuals who do not meet any of the above categories with symptoms
- Health care workers and first responders
- Individuals with mild symptoms in communities experiencing high COVID-19 hospitalizations
- Non-priority: Individuals without symptoms
-
Priority 1: Ensure optimal care options for all hospitalized patients, lessen the risk of nosocomial infections, and maintain the integrity of the healthcare system
- Some health agencies and departments (e.g., in the United Kingdom) directly recommend that individuals suspected of COVID-19 not be tested for the virus if they only have mild symptoms and instead, should remain at home in isolation. [95]
-
Notify authorities: All measures should be consistent with appropriate health department regulations. In the US, health care personnel should immediately notify state or local health departments of patients with fever and/or respiratory symptoms suspected of COVID-19 (i.e., person under investigation, or PUI) to determine:
- If criteria are met for testing
- To receive support in collecting, storing, and shipping specimens
Collecting and handling clinical specimens (recommendations based upon CDC guidelines) [96]
-
General measures
- Specimens should be collected at a clinical or public health laboratory for routine testing of respiratory pathogens.
- Testing should only be conducted for individuals demonstrating symptomatic disease in consultation with a clinician.
- Close contact with PUIs should be avoided; anytime it is required, health care personnel should wear all recommended personal protective equipment (PPE) for COVID-19.
-
Collection of specimens
- For all individuals, conduct on an upper respiratory specimen.
- Preferred method by the CDC: nasopharyngeal specimen (NPS) using a single synthetic fiber swab with a plastic shaft that is gently inserted through the nostril to the posterior nasopharynx , where it is left for several seconds to absorb secretions before slowly removing while rotating
- Alternative methods
- Handling
- Swabs should be placed immediately into sterile transport tubes containing 2–3 ml of viral transport media
- If both NP and OP swabs: combine in a single tube
- When feasible, lower respiratory tract specimens should also be collected.
- If productive coughing: from sputum
- If undergoing mechanical breathing: lower respiratory tract aspirate or bronchoalveolar lavage
- 2–3 mL should be placed in a sterile sputum collection cup or sterile dry container.
- Many locations have necessary materials already prepared in respiratory virus swab collection kits.
- For all individuals, conduct on an upper respiratory specimen.
For patients in late, severe stages of infection (pneumonia, ARDS, sepsis), swab specimens from the upper respiratory tract may be negative, while the lower respiratory tract is positive.
-
Storage and transport of specimens
- Store specimens at 2–8°C up to 72 hours after collection.
- If there is a delay in shipping or testing, specimens should be stored at -70°C.
- Label and transport immediately as requested by the appropriate government health agency/departments.
- In the US, the CDC requests the following:
- Label each specimen container with the patient’s ID number (e.g., medical record number), unique CDC or state-generated nCov specimen ID (e.g., laboratory requisition number), specimen type (e.g., serum) and the date the sample was collected.
- Complete a CDC Form 50.34 for each specimen submitted. In the upper left box of the form,
- Store specimens at 2–8°C up to 72 hours after collection.
-
At-home sample collection
- Several at-home sample collection kits have been granted an Emergency Use Authorization by the FDA (November 2020). [97][98][99]
- Should only be conducted if a patient is suspected to have COVID-19 and has been screened by a health care professional.
Quantitative reverse transcription PCR (RT-qPCR)
Confirms active infection with SARS-CoV-2 from patient specimens.
-
Method: detection of viral genome regions specific to SARS-CoV-2
- Viral RNA is transcribed (via reverse transcription) into complementary DNA (cDNA) and then amplified with qPCR
- Positive test result: positive amplification of the viral genome indicates presence of viral particles in patient specimen.
- Negative test result: negative amplification of the viral genome indicates no viral particles in patient specimen [100]
- Specimen: e.g., nasal or pharyngeal swabs or aspirates, sputum, bronchoalveolar lavage
-
Advantages
- Results should be available within a few hours
- Has both high sensitivity and specificity for identifying the SARS-CoV-2 genome in a specimen [101][102][103]
- The specificity is close to 100% because the primers used for the PCR only bind to a unique sequence within the genome of SARS-CoV-2.
- The chance of identifying infected individuals can likely be increased by:
- Testing specimens from multiple sites [37]
- Performing simultaneous antibody testing
-
Limitations: does not detect antibodies against SARS-CoV-2 [100]
- Cannot determine if an individual is immune to COVID-19
- Cannot provide information regarding prior infections
PCR can still be negative early in the disease or may produce a false-negative test result due to technical errors (e.g., inaccurate specimen collection). In such cases, if there is still concern that a patient is infected, consider repeating PCR testing every 2–3 days (potentially with both upper and lower respiratory tract specimens) and performing simultaneous antibody testing. [101]
Serological studies [104][105]
-
Current situation (November 2020)
- Antibodies specific to SARS-CoV-2 can confirm previous exposure of an individual to the virus for either symptomatic or asymptomatic infection.
- There are currently many efforts to develop effective antibody testing and ensure correct interpretation of test results. [106]
- Further research is necessary, e.g., to ensure test specificity for SARS-CoV-2
- The interpretation of a diagnostic test result depends on the properties of the test (e.g., sensitivity, specificity) as well as the prevalence of the disease in the target population.
- There is evidence of immune responses to SARS-CoV-2 following initial infection, [45][47][48] but the duration of immunity and its efficacy on the prevention of reinfection is still uncertain. [50][51] [52][53][54]
-
Advantages of serological studies
- To collect epidemiological data (large-area screening)
- Estimate the spread in the population by testing large numbers of people
- Identifies individuals who have previously been exposed to SARS-CoV-2 and have acquired specific antibodies through asymptomatic infections
- To help develop treatments: neutralizing antibodies in blood serum donations from immune individuals are being tested as immunotherapy in severe cases [107]
- To collect epidemiological data (large-area screening)
-
Limitations of serological studies
- Not as sensitive or specific as PCR: should not serve as the sole test to diagnose or exclude COVID-19
- Antibodies are not detectable until a few days after infection (seroconversion), which may lead to negative test results during early infection.
- Positive results may be due to past or present infection with other coronavirus strains
- Conducting antibody tests for SARS-CoV-2 in a population with a low prevalence of COVID-19 cases can lead to high numbers of false-positives results.
- False-positives can be dangerous because individuals might abandon exposure risk management measures (e.g., social distancing) based on a false sense of security from having previously been exposed to the SARS-CoV-2.
- Not as sensitive or specific as PCR: should not serve as the sole test to diagnose or exclude COVID-19
Testing for SARS-CoV-2 in a population with a low prevalence of COVID-19 can lead to high numbers of false-positive test results, which can convey a false sense of security in situations where individuals consider themselves immune to the virus but, in fact, have not been infected.
Serological tests that can show previous exposure to SARS-CoV-2 antigens from infection or potential future vaccinations are expected to become highly relevant over the course of the pandemic!
Rapid IgM-IgG antibody tests [108][109]
- Method: point-of-care detection of antibodies against SARS-CoV-2 (IgM and IgG antibodies)
- Specimen: serum, plasma, or whole blood
-
Advantages: Results are usually available within a few minutes.
- Support in identifying COVID-19 quickly at point of care
- Quickly help identify individuals who had a recent or past infection
The high demand for testing modalities and the potential seen by some companies to profit from the situation has led some to falsely advertise FDA approval/authorization or claim they can diagnose COVID-19. [110] We recommend that individuals refer only to statements published directly by reliable sources, e.g., the FDA (see “Reliable sources of information” below).
ELISA (Enzyme-Linked Immunosorbent Assay)
- Method: detection of antibodies against SARS-CoV-2 (IgM, IgA, and IgG antibodies)
- Specimen: serum, plasma, or whole blood
- Limitations: Not suitable in all settings because it takes several hours and usually requires a lab.
Antigen testing [111]
- Method: direct detection of antigens (protein fragments) specific for SARS-CoV-2
- Specimen: nasal swabs
-
Advantages
- Very quick: Results should be available within minutes.
- Very specific: Positive test results confirm active infection.
- Lower costs compared to PCR
-
Limitations
- Less sensitive than PCR testing: Negative antigen test results cannot rule out active infection and should be confirmed with subsequent RT-qPCR testing.
- Not yet widely available: Time-consuming development has led to later test release compared to other types of tests (e.g., RT-qPCR, antibody test).
Management
For any management steps involving close contact with patients with confirmed or suspected COVID-19, observe all hygiene and isolation measures in accordance with state or local health department recommendations and regulations! (See “Infection prevention and control in healthcare settings” and “PPE for COVID-19” above.) [112]
Reporting
- All measures should be consistent with state or local health department regulations. Generally, this involves notifying state and/or local health departments as well as healthcare facility (HCF) infection control personnel of persons under investigation (PUI) and confirmed cases. [113]
Initial steps and determining site of care
- Measure vital signs: BT, BP, HR, RR, and SpO2
-
Screen for mild courses: Consider ambulant management with watchful waiting for patients with:
- Low fever (< 100.4°F or 38.3°C)
- No signs of respiratory distress
- Normal SpO2
- Negative qSOFA score
-
Screen for warning signs: Admit symptomatic patients with the following signs:
- Difficulty breathing
- Persistent pain or pressure in the chest
- Change in mental status (e.g., confused, nonresponsive)
- Signs of cyanosis (e.g., bluish lips)
- SpO2 ≤ 93%
- Respiratory rate > 22/min
- Fever > 37.5°C
- Systolic BP: ≤ 100 mmHg
-
Screen for high-risk patients to hospitalize: Depending on clinical status, consider admitting high-risk patients who show any COVID-19 symptoms to closely monitor for developing a severe course and complications. Individuals considered at high-risk for a severe course (and thus a higher mortality rate) include those with: [114]
- ≥ 65 years
- Certain underlying conditions, particularly:
- Chronic lung disease or moderate to severe asthma
- Serious cardiovascular conditions
- Metabolic conditions (especially diabetes mellitus)
- Renal failure
- Liver disease
- Severe obesity (BMI ≥ 40)
- Immunosuppression
-
Obtain patient preferences: Especially for hospitalized patients, obtain patient preferences for the following:
- Cardiopulmonary resuscitation (e.g., DNR orders)
- Airway management preferences: intubation, noninvasive ventilation, high-flow
- Advance healthcare directive
- End-of-life care
Management of asymptomatic or mild courses
There is no effective antiviral treatment; management consists of supportive self-care at home (home care) and isolation in accordance with health department regulations.
-
Minimize spread of infection: [88]
- Stay in a designated “sick room” away from other people.
- Use a separate bathroom if possible.
- Do not leave home except to get medical care.
- If going out is necessary, avoid public places, public transportation, ridesharing, and taxis.
- Call before seeking medical care.
- Wear a facemask.
- Follow general protective measures as described above.
- Avoid sharing personal household items and wash any used items thoroughly.
- Clean “high-touch” surfaces daily.
- Management of close contacts: notifiable in accordance with state or local health department regulations
- Supportive care: rest, adequate hydration and nutrition
-
Symptomatic treatment: Antipyretic and anti-inflammatory therapy for controlling fever and pain (if needed)
- Agents: both acetaminophen and NSAIDS are safe options (despite controversy; see “Do ACE inhibitors and NSAIDs aggravate COVID-19?” under section "Management of hospitalized patients" for more information)
- Acetaminophen (paracetamol): drug of choice in most patients, unless contraindications are present (e.g., liver disease)
- Alternative: ibuprofen or other NSAIDS, but limit use in elderly patients and those with cardiovascular or renal disease
- Agents: both acetaminophen and NSAIDS are safe options (despite controversy; see “Do ACE inhibitors and NSAIDs aggravate COVID-19?” under section "Management of hospitalized patients" for more information)
-
Monitor symptoms carefully: Individuals should seek medical care immediately if symptoms worsen or any emergency warning signs develop, including: [93]
- Difficulty breathing
- Persistent pain or pressure in the chest
- Change in mental status (e.g., confused, nonresponsive)
- Signs of cyanosis (e.g., bluish lips)
- Discontinuing home isolation: Determining when to end home isolation is approached from different strategies, which can vary according to health departments and testing resources. See “Discontinuation of isolation and other transmission-based precautions” below.
Management of hospitalized patients
General approach
- Administer O2 therapy via nasal canula: 1–6 L O2/min if SpO2 ≤ 93%
-
Provide supportive care:
- Adequate hydration, nutrition, and rest
- Fever management
- Fluid-sparing resuscitation and electrolyte balance as needed
- Evaluate and monitor: Vital signs, SpO2, laboratory studies, and imaging should regularly be conducted to help guide management and monitor progression.
-
Administer medical therapy as needed
- Recommended therapies may include remdesivir, dexamethasone, empiric antibiotic therapy, and/or anticoagulation
- Consider experimental drugs in the context of compassionate use programs, research studies, and individual cases after weighing the risks and benefits
-
Admit to ICU and administer ventilation if any of the following:
- Signs of respiratory failure
- Dyspnea with hypoxemia
- Tachypnea (RR > 30/min)
- See also management sections of:
Evaluation and monitoring
Laboratory studies [63]
Regular laboratory monitoring of hospitalized patients should include: ABG/VBG, CBC, electrolyte panel, inflammatory markers (CRP, LDH, procalcitonin), organ function (creatinine, urea nitrogen, urine volume, LFTs, cardiac enzymes), coagulation tests, and D-dimer. Blood culture should also initially be considered.
- Blood gas: to quickly monitor blood gas tension, oxygen saturation, and pH gases
-
CBC: Observe especially for ↓ WBC, ↓ lymphocytes, and ↓ platelets. Advanced lymphocytopenia and thrombocytopenia < 100.000/μL are signs of a severe course.
- Leukopenia: ∼ 30% of cases
- Lymphocytopenia: ∼ 80% of cases
- Thrombocytopenia: ∼ 40% of cases
-
Inflammatory markers: ↑ CRP, ↑ CK, ↑ LDH, and ↓ Albumin
- Procalcitonin (PCT) levels can be elevated in patients with severe courses of the disease, particularly if there is bacterial coinfection with pneumonia and/or sepsis [65][115]
- ↑ Ferritin, ↑ IL-6
- See “Diagnostics” of sepsis for more information.
-
Organ function: abnormal findings indicate organ damage and possible progression to MODS
- Renal function: monitor creatinine and urea
- Hepatic function: monitor AST/ALT, GGT, bilirubin
- Cardiac enzymes: ↑ troponin indicates cardiac damage (See “Diagnostics” of acute coronary syndrome.)
- Coagulation function: PT/INR, aPTT
- D-dimer: elevated levels (particularly > 1 μg/L) at an early stage indicate a poor prognosis [116]
- Blood culture: initially 2 pairs
- If under undergoing propofol therapy: triglycerides every 3 days
Imaging [63][117]
All hospitalized patients should undergo initial and follow-up imaging according to the clinical course.
- Chest x-ray: usually bilateral, peripheral opacities in multiple lobes [118][119]
-
Point-of-care ultrasound (POCUS): better results than chest x-ray and easily repeatable for reevaluation [120]
- Thickened and irregular pleural lines
- B lines as an early sign indicate a need for intensifying care
- Consolidation (both translobar or non-translobar) indicates progression of the pulmonary disease
- Should also screen for cardiomyopathy
-
Chest CT: recommended for hospitalized patients [117][121][122]
- Can initially be normal in up to 60% of hospitalized patients [122]
- CT findings are sometimes already present before clinical manifestation.
-
Findings: generally bilateral, but a minority are unilateral
- Ground glass opacities that can progress to solid white consolidation in severe infection
- Inter- and/or intralobular septal thickening
- Mixed “crazy-paving” pattern = combination of ground-glass opacity with superimposed interlobular septal thickening and/or intralobular septal thickening
Medical therapy
Currently recommended therapies (December 2020)
Recommendations vary based on the patient's condition and oxygen supplementation needs. Based on the course of disease, when indicated, consider administering remdesivir early (to decrease viral replication) and corticosteroids later (to counter cytokine storm).
-
Remdesivir [123][124]
- Mechanism of action
- Phosphoramidate prodrug: metabolized in the cells to produce an active neucleotide analogue
- Active form: acts as a neucleotide analogue that inhibits viral RNA-dependent RNA polymerase → impairment of viral exoribonuclease (ExoN) proofreading → inhibition of viral RNA production
- The NIH COVID-19 Treatment Guidelines Panel recommends remdesivir for: [125]
-
Hospitalized adults and pediatric patients (aged ≥ 12 years old and weighing ≥ 40 kg) with COVID-19 who:
- Require oxygen supplementation BUT
- Do not need oxygen supplementation through a high-flow device, noninvasive ventilation, invasive mechanical ventilation, or ECMO
- Might be used in combination with dexamethasone in patients who require oxygen supplementation through a high-flow device or noninvasive ventilation.
-
Hospitalized adults and pediatric patients (aged ≥ 12 years old and weighing ≥ 40 kg) with COVID-19 who:
-
There is not sufficient data for recommending remdesivir for patients who:
- Have mild to moderate COVID-19 (who do not require supplemental oxygen)
- Require invasive mechanical ventilation or ECMO
- The effectiveness and safety of remdesivir for the treatment of children aged < 12 years and weighing < 40 kg and pregnant women with COVID-19 have not been evaluated. It may be considered after weighing the risks and benefits.
- Chloroquine or hydroxychloroquine decrease the antiviral activity of remdesivir: should not coadminister
- Mechanism of action
-
Corticosteroids
- Based on results of a large randomized UK study in which dexamethasone resulted in lower mortality for patients on ventilators (reduced by ∼ 33%) and those requiring oxygen (reduced by ∼ 20%), the NIH COVID-19 Treatment Guidelines Panel recommends using dexamethasone in hospitalized patients who require: [125]
- Mechanical ventilation or ECMO
- Oxygen supplementation through a high-flow device or noninvasive ventilation
- Increasing amounts of oxygen supplementation but not through a high-flow device
- Believed to reduce the severity of cytokine storm
- Further studies
- Intravenous application
- Systemic corticosteroid therapy does not seem to affect outcomes in mild courses of COVID-19. [126]
- One study suggests faster recovery from severe pneumonia in patients who have been treated with low-dose methylprednisolone early in the course of disease.[127]
- Inhaled application: Withdrawing inhaled corticosteroids in patients with preexisting health conditions (e.g., asthma, COPD) who have previously been treated with these drugs might increase the risk of unfavorable outcomes. [128]
- Intravenous application
- Based on results of a large randomized UK study in which dexamethasone resulted in lower mortality for patients on ventilators (reduced by ∼ 33%) and those requiring oxygen (reduced by ∼ 20%), the NIH COVID-19 Treatment Guidelines Panel recommends using dexamethasone in hospitalized patients who require: [125]
-
Baricitinib [129]
- Selective JAK1 and JAK2 inhibitor, which blocks cytokine signaling/activity
- The FDA issued a EUA on November 19, 2020, authorizing its use in combination with remdesivir in the treatment of hospitalized adult and pediatric (aged ≥ 2 years) patients with COVID-19 who require oxygen supplementation, mechanical ventilation, or ECMO.
- After reviewing the data, the NIH COVID-19 Treatment Guidelines Panel issued the following recommendations (as of December 2020):
- There is not enough data supporting the use of baricitinib in combination with remdesivir in patients who have no contraindications to the use of corticosteroids. In cases where corticosteroids are contraindicated, baricitinib can be used in combination with remdesivir in nonintubated patients who require supplemental oxygen.
- More studies are needed to clarify the use of baricitinib in the treatment of patients with COVID-19.
-
Anticoagulation: NIH COVID-19 Treatment Guidelines Panel recommendations for preventing thrombotic events in patients with COVID-19 include: [125]
- Hospitalized nonpregnant adults with no findings suggestive of a thromboembolic event should be treated with prophylactic dose anticoagulation (e.g., with LMWH or fondaparinux).
- Extended venous thromboembolism prophylaxis can be considered after discharge in patients with a high risk of thrombotic events (risk measurement should follow the same recommendations used for patients without COVID) and a low risk of bleeding.
- The indications for venous thromboembolism prophylaxis in children with COVID-19 are the same as for children without COVID-19.
- Hospitalized pregnant women with severe COVID-19 should be treated with prophylactic dose anticoagulation unless there are contraindications for its use.
- Patients with findings suggestive of a thromboembolic event should be managed the same as patients without COVID-19.
- There is currently no evidence supporting the use of prophylactic anticoagulation therapy in nonhospitalized patients.
Experimental drugs
A variety of agents are being tested, and clinical studies are being conducted. The use of these drugs can be considered in the context of research studies, compassionate use programs, and individual cases after weighing the risks and benefits. [27][130][131][132]
-
RNA polymerase inhibitors and nucleotide analogs
- Baloxavir marboxil [133]
- Favipiravir [134] (approved in Japan)
-
Inhibition of adhesion and invasion
- Camostat (serine protease inhibitor, inhibits TMPRSS2) [25]
- Inhibition of fusion
-
Chloroquine and less toxic hydroxychloroquine (± azithromycin) [135][136][137][138] [139] [140][141][142][143]
- Currently (as of October 2020), there is no evidence supporting the use of these drugs in the treatment of patients with COVID-19. [125]
- Also, there is no supporting evidence regarding the efficacy to prevent COVID-19 when administered as postexposure prophylaxis [125]
- Drug shortages
- The dissemination of false information regarding the efficacy of hydroxychloroquine to treat COVID-19 has led to a surge in purchases and severe supply shortages worldwide.
- Pose challenges to patients with rheumatic diseases whose health depends on the availability of hydroxychloroquine
- Umifenovir [144]
-
Chloroquine and less toxic hydroxychloroquine (± azithromycin) [135][136][137][138] [139] [140][141][142][143]
- Inhibition of protease
-
Lopinavir/ritonavir [145][146][147]
- As of October 2020, the US NIH recommends against the use of lopinavir/ritonavir due to undesired pharmacodynamics and no current evidence of beneficial effects. [125]
- Should only be administered in the context of clinical trials
- Darunavir/ritonavir (possibly in combination with umifenovir) [144]
-
Lopinavir/ritonavir [145][146][147]
- Inhibition of nuclear import: ivermectin [148]
- Commonly used anti-parasitic drug
- Has been shown to reduce viral load in cell cultures infected with SARS-CoV-2
-
Antibody therapy and biologicals [149]
-
SARS-CoV-2 spike protein receptor-binding domain binders
- Recombinant human monoclonal antibodies that bind to the SARS-CoV-2 spike protein receptor-binding domain epitopes, blocking the entry of SARS-CoV-2 into the host cells
- Bamlanivimab
- The FDA issued a EUA on November 10, 2020, authorizing the use of bamlanivimab in the treatment of patients with mild to moderate COVID-19 who are at increased risk of disease progression and hospitalization [150]
- However, after reviewing the data, the NIH COVID-19 Treatment Guidelines Panel concluded that there is currently (December 2020) not enough evidence supporting the use of bamlanivimab in the treatment of patients with mild to moderate COVID-19 [151]
- Casirivimab and imdevimab
- The FDA issued a EUA on November 21, 2020, authorizing the use of casirivimab and imdevimab combination in the treatment of patients with mild to moderate COVID-19 who are at increased risk of disease progression and hospitalization [152]
- However, after reviewing the data, the NIH COVID-19 Treatment Guidelines Panel concluded that there is currently (December 2020) not enough evidence supporting the use of casirivimab and imdevimab combination in the treatment of patients with mild to moderate COVID-19 [153]
-
IL-6 pathway inhibitors
- Increased levels of IL-6 are associated with more severe courses of COVID-19. By inhibiting the IL-6 pathway, these drugs are hypothesized to counter immune response dysregulation
- Anti-IL-6 receptor monoclonal antibodies (Tocilizumab, Sarilumab)
- Anti-IL-6 monoclonal antibody (siltuximab)
- Currently (as of October 2020), there is not enough evidence demonstrating the efficacy of IL-6 pathway inhibitors in the treatment of patients with COVID-19. [125]
- Some studies demonstrated a decrease in mortality and/or need for mechanical ventilation [154][155]
- Others have not identified a clinical benefit. [156][157]
- Recombinant ACE2 (rhACE2, APN01) [26][158]
-
Passive immunization through serum therapy [159]
- The FDA issued a EUA on August 23, 2020, for COVID-19 convalescent plasma to treat hospitalized patients with COVID-19 [160]
- However, as of September 2020, the NIH COVID-19 Treatment Guidelines Panel states that there is still not enough available clinical evidence to support the use of COVID-19 convalescent plasma for the treatment of patients with COVID-19. [125]
-
SARS-CoV-2 spike protein receptor-binding domain binders
- Interactions between the drugs listed: numerous; this must be kept in mind when considering administration (prescribing information!) or use according to information provided by the Liverpool Drug Interaction Group! [161]
There are no proven benefits of hydroxychloroquine for COVID-19 treatment, which is the main reason for the FDA revoking the EUA of this usage. Hydroxychloroquine and other drugs under investigation should only be used in COVID-19 treatment in the context of clinical studies. Otherwise, they should be reserved for individuals who depend on these drugs for other reasons (e.g., hydroxychloroquine for rheumatic diseases). [162][163]
When a drug is administered during the course of the disease is likely a decisive factor. While drugs that inhibit the invasion and replication of the virus (e.g., camostat, rhACE2) would have to be administered as early as possible, other approaches, which aim to control immune response dysregulation in severe courses (e.g., tocilizumab), could also be effective in later stages of the disease!
No evidence that ACE inhibitors and NSAIDs aggravate COVID-19
- Especially in March 2020, unconfirmed reports and published hypotheses about the pathophysiology of COVID-19 raised suspicions that RAAS antagonists (esp. ACE inhibitors and angiotensin II receptor blockers), NSAIDs, and thiazolidinediones may facilitate infection with and exacerbate the course of COVID-19.
- Although these medications may increase ACE2 receptor expression, there is currently (October 2020) no evidence supporting the association between the treatment with these agents and severe courses of the disease. [164][165][166][167][168][169][170]
Regardless of COVID-19, NSAIDs may have nephrotoxic and cardiotoxic effects in individuals with cardiovascular and/or renal conditions.
Intensive care
-
Indications: Admit to ICU and initiate intubation if any of the following are present:
- Signs of respiratory failure
- Dyspnea with hypoxemia
- Tachypnea (RR > 30/min)
-
Airway management: Considering health-care workers have an increased risk of developing COVID-19, especially during high-risk procedures such as intubation, aerosol-generating procedures should be avoided whenever possible! [171][172][173]
- Endotracheal intubation: Rapid-sequence induction is preferred, especially as it minimizes the spreading of infectious aerosols.
- To avoid aerosolizing the virus, noninvasive ventilation, high-flow oxygen therapy, bronchoscopy, and nebulizer treatment should be avoided unless there is an absolute indication.
-
Mechanical breathing
- Management recommendations regarding ventilated patients with COVID-19: [12]
- Ventilation with lower tidal volumes (LTV) as with ARDS: moderate tidal volume (6 mL/kg) [174]
- Plateau pressure < 30 cm H2O
- Permissive hypercapnia (target pH > 7.3)
- PEEP and FiO2 settings: adjust as needed according to ARDSnet protocol [175]
- See therapy of ARDS for more information.
- The effects and indications of mechanical ventilation for patients with COVID-19 are currently subject to discussion. [176]
- High mortality rates among ventilated patients have been reported and could be due to a variety of factors: [177] [178]
- Lung injury from COVID-19 might manifest differently from typical ARDS, and adjustments in ventilation management may be necessary. [179]
- Lack of ventilation experts and personnel trained to operate ventilation machines could contribute to worse outcomes among severely ill patients.
- Strains on many health care systems worldwide, high levels of stress among health care providers, and insecurity about treatment strategies and management for COVID-19 might affect the quality of care for some patients:
- Physicians might favor drastic measures (e.g., intubation) over restrictive approaches (e.g., breathing masks) early in disease progression.
- Higher rates of intubated and ventilated patients might result from concerns among health-care professionals about contracting COVID-19 through potentially aerosol-generating methods like nasal tubes and breathing masks.
- The effects of COVID-19 on the respiratory system are not yet fully understood, prompting some physicians to advise against changing established protocols regarding ventilation management in COVID-19 patients presenting with ARDS. [180]
- In patients with confirmed COVID-19 and relatively mild signs of ARDS, high-flow nasal cannula therapy could be considered initially. However, mechanical ventilation might still be necessary at a later point in the course of disease. [181]
- High mortality rates among ventilated patients have been reported and could be due to a variety of factors: [177] [178]
- Limited ventilator availability: High volumes of patients with critical conditions due to COVID-19 have raised concerns regarding ventilator shortages in hospitals during the pandemic.
-
Ventilator sharing: a controversial, off-label procedure in response to ventilation capacity shortages
- Pros and cons should be carefully considered in the context of a specific situation.
- Some institutions are already experimenting with sharing ventilators to compensate for short supplies. [182][183]
- The procedure is discouraged by some medical societies. [184]
- The FDA granted an Emergency Use Authorization for ventilator expansion devices to facilitate the treatment of up to four patients with one ventilator [185]
- New inventions: Mechanical devices have been designed to compress a bag valve mask (BVM) and serve as a temporary ventilator during emergencies and times of ventilator shortages, specifically the COVID-19 pandemic.
- MIT E-Vent (Massachusetts Institute of Technology Emergency Ventilator)
- AmboVent by the Israeli Air Force (IAF)
- Pandemic Ventilator Project
-
Ventilator sharing: a controversial, off-label procedure in response to ventilation capacity shortages
- Management recommendations regarding ventilated patients with COVID-19: [12]
-
Extracorporeal blood purification therapy: can be used to filter inflammatory cytokines from the blood of patients with severe courses of COVID-19 [186]
- Use is based on the hypothesis that cytokine storms are important in the etiology of severe courses
- The treatment is invasive, so it should only be considered for patients with respiratory failure who are in the ICU.
- A special filter, which can be used with standard extracorporeal purification machines (e.g., for hemodialysis), has been granted an Emergency Use Authorization by the FDA (April 10, 2020).
Discontinuation of isolation and other transmission-based precautions
-
CDC recommends to end home isolation according to a strategy based on clinical criteria (December 2020) [187]
- For patients with asymptomatic COVID-19: 10 days have passed without illness since the date of the positive COVID-19 test. [187][188]
- 10 days after the onset of symptoms AND
- No fever for at least 24 hours without antipyretics AND
- Respiratory symptoms have improved
- Currently (December 2020), the CDC and WHO do not recommend discontinuing isolation according to test-based strategies[188]
Discharging patients from healthcare facility
Recommendations based on CDC guidance: [189]
-
Considered infectious (requirements for discontinuation transmission-based precautions are not met): If clinically indicated, patients may be discharged without meeting the criteria for discontinuation of transmission-based precautions.
- If discharged home: They should follow guidance for home care and isolation as described above in “Management of asymptomatic or mild courses.”
- If discharged to long-term care or assisted-living facility: Transmission-based precautions should still be followed.
-
Considered noninfectious (requirements for discontinuation transmission-based precautions are met): If clinically indicated, patients may be discharged without COVID-19-associated restrictions.
- Exceptions: Some patients may have recovered but have persistent symptoms (e.g., cough). Additional precautions are recommended for such individuals (such as wearing a facemask and staying in a single room) until symptoms completely resolve or 14 days after onset of symptoms, whichever is longer.
Prognosis
-
Mortality rate: ranges from ∼ 0.5 to 3%
- The mortality rate greatly increases for individuals with certain underlying medical conditions or > 60 years of age, with the most lethal rates for individuals > 80 years reaching ∼ 15%. [8]
-
Individuals considered at high-risk for a severe course (and thus a higher mortality rate) include those with: [114]
- ≥ 65 years
-
Certain underlying conditions, particularly:
- Chronic lung disease or moderate to severe asthma
- Serious cardiovascular conditions
- Metabolic conditions (especially diabetes mellitus)
- Renal failure
- Liver disease
- Severe obesity (BMI ≥ 40)
- Immunosuppression
-
Pediatric patients: See “COVID-19: children” below for more details.
- Most children with COVID-19 experience a mild course and some are asymptomatic. [190][191]
- The CDC reports: [192]
- Up to 20% of children were hospitalized, which is lower than adults (up to 33%)
- Children aged < 1 year were much more likely to be hospitalized (up to 62%)
- For children aged 1–17 years, up to 15% were hospitalized
- Severe courses requiring ICU admittance only occurred in ∼ 2% of children with COVID-19, whereas adults required ICU admittance in up to 4.5% of cases.
- Children aged < 1 year were more likely to have a severe course that required ICU admittance (5.3%)
- Three deaths were reported among pediatric cases; further investigation continue to determine if COVID-19 was the cause of death.
- Up to 20% of children were hospitalized, which is lower than adults (up to 33%)
- A study evaluating 2143 pediatric patients with COVID-19 in China showed: [191]
Vaccination
FDA approved vaccines
Last updated: 9 April 2021
COVID-19 vaccines | |||||||
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Name | Manufacturer | Type | Administration | Common side effects | Storage | FDA emergency use authorization (EUA) | Contraindications |
Pfizer-BioNtech COVID-19 vaccine [193] |
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Moderna COVID-19 vaccine [194] |
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Janssen COVID-19 vaccine (Johnson & Johnson vaccine) [195] |
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Vaxzevria [196] |
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Sputnik V vaccine [197] |
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Administering the vaccine
Special patient groups
- The COVID-19 pandemic has complicated many patient interactions, especially in places where the pandemic may be more profound and equipment, resources, space, and personnel are limited. During the pandemic, certain procedures may need to be delayed or only conducted under certain circumstances. Similarly, special considerations may need to be considered for patient groups that normally have regular check-ups. Some groups that may be affected include:
- People with disabilities
- Pregnant and breastfeeding patients
- Children (including immunizations and other appointments)
- Health care provider appointments and telemedicine, including:
- Check-up visits
- Gynecology visits
- Elective surgeries and procedures
- Patients should call their health care providers to determine how COVID-19 may affect operations.
COVID-19: health care provider appointments and telemedicine
Risk assessment [198][199]
- Health care workers and other professionals at health care facilities are at increased risk of exposure to SARS-CoV-2.
- In-person health care appointments pose a risk of infection with SARS-CoV-2.
- Individuals with follow-up appointments for underlying health conditions are generally at higher risk of severe courses of COVID-19.
- Asymptomatic patients can transmit SARS-CoV-2 to other patients and medical personal.
- Delaying nonurgent procedures and surgeries can save critical medical supplies (e.g., PPE, ICU beds, ventilators) and medical personnel that are needed for the care of patients with COVID-19.
Management [200]
-
General approach [198]
-
In-person appointments should be minimized as much as possible.
- Elective in-person appointments (e.g., general check-up visits, follow-up appointments) should be delayed or conducted via telemedicine (e.g., phone or video calls).
- Elective surgeries should be delayed and rescheduled when possible.
- Acutely ill patients, with or without COVID-19, have to be admitted.
- Patients with mild symptoms or suspicion of COVID-19 (e.g., via recent contact) should be:
- Assessed for the ability to self-isolate and monitor their symptoms at home
- Asked about their living situation and risk of transmission to others
- Followed up closely (using telemedicine) to adjust the medical approach as needed (e.g., admitting patients if symptoms worsen)
-
In-person appointments should be minimized as much as possible.
-
Before approaching a health care facility
- Patients should call their health care provider for advice and assess the risks and benefits associated with a particular in-person appointment (e.g., the benefits of receiving an infusion for a chronic disease might outweigh the risk of contracting SARS-CoV-2).
- Algorithms should be used when assessing patients via telemedicine to determine their need to call 911, go to the emergency department, or come in for an appointment.
-
At the health care facility
- All patients who require in-person appointments should be:
- Assessed for symptoms of COVID-19, ideally before entering a health care facility (e.g., via telemedicine) or upon entry
- Triaged according to the severity of their symptoms
- Distributed to either a COVID-19 unit or COVID-19-free unit depending on previous test results and/or COVID-19 related symptoms (e.g., respiratory symptoms)
- Follow appropriate infection control and preventive measures (see above).
- All patients who require in-person appointments should be:
-
Telemedicine (or telehealth) [201]
- Allows health care providers to offer medical care and advise to patients without in-person contact
- Methods: advice telephone lines, telephone appointments, video conferences, text messaging, email exchange, etc.
- Use is especially encouraged during the COVID-19 pandemic
- To reduce the risk of transmission of SARS-CoV-2 between patients and health care workers
- To decrease the number of patients in health care facilities and spare PPE and clinic space for critically ill patients
- Billing for telemedicine appointments is not standardized in the US health care system. This might lead to an inconsistency in the availability of specific methods between different health care providers.
-
Workers at health care facilities [202]
- All personnel should follow standard recommendations like hand hygiene before and after any patient contact, wearing disposable masks, and physical distancing whenever possible (see “Infection control and preventive measures” for more info).
- Additional PPE for specific circumstances:
- Includes eye protection or face shields, gowns, and gloves (in addition to masks)
- Recommended when caring (e.g., bedside care, operative procedures) for a patient who is either positive for SARS-CoV-2 or has symptoms of COVID-19
-
N95 respirators should be used instead of simple masks when:
- Performing aerosol-generating procedures (e.g., intubation, CPR) on a patient who is either positive for SARS-CoV-2 or has symptoms of COVID-19
- Performing airway procedures on any patient
COVID-19: people with disabilities
Risk assessment
- No increased risk of contracting COVID-19 from disabilities alone
- People with disabilities are more likely to have medical comorbidities that impose an increased risk for severe courses (see “Management” above).
- The risk of infection might be increased compared to the general population when:
Management
- Develop a personal plan/strategy with the patient
- Safety net: organize backup support in case the current support person becomes sick or is quarantined
- Emergency communication: set up multiple reliable ways to quickly call for help (e.g., speed-dial in phone, carrying a cell phone and a note with important contacts)
- Stockpiling: ensure sufficient supplies of household items, medication, and medical equipment that can last for about 30 days
- Specific contact precautions
- Support persons: transparent about symptoms and sick contacts
- Hand hygiene: should be followed by everyone entering the home, and before and after close personal contact
- Frequently used surfaces, medical devices, and other objects: clean and disinfect regularly
Reference: [203]
COVID-19: pregnancy and breastfeeding
Risk assessment [204][205][206]
Only a few studies with small cohorts have been conducted so far, making recommendations difficult at this time. [207]
- Affect of pregnancy: Pregnant women appear to have the same risk of infection and severity as non-pregnant adults
-
Transmission
- Currently no evidence of increased risk for pregnant women regarding miscarriage
- Vertical transmission of SARS-CoV-2 to the fetus is unlikely: there is very little evidence to support it [208][209]
- So far, no data shows an increased risk of transmission through breastmilk. [209][210]
- The virus has not yet been detected in amniotic fluid, umbilical cord blood, nasopharyngeal swabs of neonates, or breast milk.
Management [210]
- Contact patient gynecologist if nasopharyngeal swab tests positive or the patient has had contact with a symptomatic individual.
- In the event of home quarantine, the necessity of prenatal visits should be discussed with the patient's gynecologist.
- Prenatal ultrasounds are recommended for surveillance (e.g., screening for intrauterine growth restriction or possible malformations)
- In mothers who have tested positive or have a high degree of suspicion for infection, birth should take place in a hospital.
- There is currently no contraindication for vaginal delivery.
- Independent of the status of infection, all women have the same rights during childbirth, including: [211]
- Separation of the newborn from the mother: physical distancing is the most effective measure to prevent infection
- Severe cases: Physical separation immediately after birth to avoid postnatal infection might be the best option if feasible in the hospital.
- Mild cases or high suspicion of infection: Breastfeeding is encouraged, but hygiene measures (i.e., washing hands, cleaning objects) and wearing a face mask are crucial in preventing viral transmission while in close contact with the newborn. [211]
- Medical treatment: may be considered case-by-case if severe disease
- Prednisolone
- Remdesivir: use is very limited in the context of therapy research for Ebola
Imaging [210]
- Chest imaging can be crucial in diagnosing COVID-19 but might put the fetus at risk for radiation exposure.
- Chest x-ray: can be performed without increased risk for the fetus
- CT scan: can be considered for severe courses in the mother (informed consent should be acquired, and a radiation shield can be used to reduce radiation exposure for the fetus)
Complications
- Although there is no evidence of direct harm from the virus to the fetus, maternal hypoxia from severe pneumonia with respiratory compromise can lead to intrauterine growth restriction and preterm birth. [210][212]
COVID-19: children
Risk assessment [190][191][192]
-
Milder disease: SARS-CoV-2 infection in children (< 18 years) generally manifest with less severe features than in adults.
- Asymptomatic cases seem to be common in children.
- Hospitalization rates are lower than in adults.
- Young children, especially infants, appear to be more vulnerable to severe or critical courses than older children.
- Children are not immune to infections with SARS-CoV-2: Severe cases and deaths have been reported.
- To date, there are different hypotheses why children might be less vulnerable than adults:
- There are fewer ACE2 receptors (where virus attaches to cells) in the lungs of children.
- Greater resilience to viral infections due to a more effective immune response and fewer comorbidities than the elderly
- Immaturity of the immune system in children might prevent the occurrence of cytokine storms (an overshooting immune response), which can lead to organ failure and death.
- Transmission of SARS-CoV-2 through children
- Infected children (symptomatic and asymptomatic) seem to have similar viral loads to other age groups and could therefore be equally infectious. [213]
- However, there is increasing evidence that the probability of transmission from children is lower than from adults. [214]
- The effectiveness of school closures in controlling SARS-CoV-2 community transmission is controversial [215]
- Researchers currently warn about reopening schools and daycare facilities in an unregulated manner as this could accelerate the spread of SARS-CoV-2 among children and their families.
-
More atypical clinical presentations
- Fewer classical symptoms, such as fever, cough, shortness of breath, compared to adult populations
- Common cold symptoms (e.g., pharyngitis, rhinitis) are seen more often.
-
Multisystem inflammatory syndrome in children (MIS-C) [73]
- Background: Features of toxic shock syndrome and Kawasaki disease have been described in children in the context of active and previous infections with SARS-CoV-2. [72][216]
- Description: MIS-C is a new syndrome seen in children in the context of COVID-19, which manifests with features of severe inflammation, organ failure, and potentially lethal outcome. [217]
- Diagnostic criteria: apply to patients currently or previously positive for COVID-19 and without an alternative diagnosis
- Patient is < 21 years old
- Fever for > 24 hours
- Features of severe illness that require hospitalization
- Laboratory evidence of inflammation (e.g., ↑ CRP, ↑ ESR, ↑ neutrophils)
- Multiorgan failure (≥ 2 organ systems involved)
Management [192][218]
-
Precautionary measures
- Observe infection control and preventive measures as described above.
- To avoid exposure and possible illness
- To reduce transmission from asymptomatic infected children to other individuals
- Suspicion for COVID-19 should be high during the pandemic
- Primary caretakers: self-isolate and contact health care provider (e.g., via call or email) when classic symptoms (e.g., fever, cough), or other signs of illness occur or when in doubt
- Clinicians: monitor symptoms and progression of illness closely, especially in infants and children with underlying health conditions
- Mental health
- Reassure children that they will not die from COVID-19.
- Encourage articulation of feelings/fears and openly address any concerns.
- Although vaccinations protect against certain organisms that can cause serious illnesses, every clinical appointment potentially increases the risk of exposure to SARS-CoV-2.
- The decision if a specific vaccine should be administered at this time should be discussed with the responsible health care provider.
- General considerations are:
- Protection provided by certain vaccines (e.g., against pertussis, or pneumococcus) might outweigh the risk of exposure to the public, especially in:
- Infants and children < 2 years
- Children with underlying health conditions
- Children with present delays in their immunization schedule
- Children > 2 years: vaccination can usually be delayed for some time
- Protection provided by certain vaccines (e.g., against pertussis, or pneumococcus) might outweigh the risk of exposure to the public, especially in:
- Observe infection control and preventive measures as described above.
-
Well-child visits and follow-up appointments
- The decision of whether a patient should be brought into the office at this time should be discussed with the responsible health care provider.
- Can often be delayed or conducted using telemedicine (e.g., phone or video calls), especially if patient is doing well
- In-person visits are often still required for:
- Age < 2 years (e.g., for growth measurements, immunizations)
- Signs of serious illness or injury (e.g., dyspnea, high fever, bone fractures, uncontrolled pain)
- Chronic diseases (e.g., chronic lung diseases, hypertension, cancer, autoimmune diseases, end-stage renal failure)
Although most children with COVID-19 appear to experience a milder course of disease, measures for infection control and prevention should be followed in order to avoid infections with SARS-CoV-2 and slow viral transmission to others.
Reliable sources of information
- Centers for Disease Control and Prevention [1]
- World Health Organization [2]
- Johns Hopkins CSSE real-time tracking of COVID-19 spread [219]
- COVID-19 Projections (by IHME) [220]
- U.S. Food and Drug Administration [221]
- COVID-19 Open Research Dataset (CORD-19) [222]
- COVID-19 Open Patent Dataset (by Lens.org) [223]
- LitCovid literature hub (by the NCBI/NLM) [224][225]
- COVID-19 Clinical Trials Tracker (by TranspariMED) [226]
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